Difference between revisions of "Category:Lake Sediments Working Group"

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(Physical properties of sediment)
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| Interpretation|| R|| Is the imagery interpreted to reflect environmental variability (e.g., chlorohphyll abundance, provenance, weathering, lake level, dust deposition, Redox, water geochemistry, glacial activity, etc)? || [[nick mckay]], [[Darrell]] 15 September 2017
 
| Interpretation|| R|| Is the imagery interpreted to reflect environmental variability (e.g., chlorohphyll abundance, provenance, weathering, lake level, dust deposition, Redox, water geochemistry, glacial activity, etc)? || [[nick mckay]], [[Darrell]] 15 September 2017
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*Accumulation rate (varves & more)
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|+Table : Essential/Recommended/Desired Metadata for sedimentary accumulation rate
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! Metadata || Essential (E)/ Recommended (R) / Desired (D) || Reason || Added by (optional)
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| accumulation rate || E || the rate of sedimentary accumulation, either as vertical change per year, or as mass per area change per year  || [[nick mckay]], [[Darrell]] 15 September 2017
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| thickness || R || the vertical thickness of the sedimentary unit  || [[nick mckay]], [[Darrell]] 15 September 2017
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| density || R || necessary for mass flux accumulation rates, see standards above || [[nick mckay]], [[Darrell]] 15 September 2017
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| Units || E || length per time for vertical change, mass per area per time for mass flux || [[nick mckay]], [[Darrell]] 15 September 2017
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| chronological constraint | E || is the accumulation rate based on varve counts, other markers of known age, a chronological model, etc || [[nick mckay]], [[Darrell]] 15 September 2017
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| accumulation rate type || R || e.g., inferred or measured || [[nick mckay]], [[Darrell]] 15 September 2017
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| Method || R || e.g, thin section, core surface, software, image analysis, etc. || [[nick mckay]], [[Darrell]] 15 September 2017
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| Pretreatment Method || D || methods for core or thin section pretreatment || [[nick mckay]], [[Darrell]] 15 September 2017
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| Interpretation|| R|| Is the accumulation sensitive to climate, glacier extent, discharge, geomorphology, anthropogenic activities, etc? || [[nick mckay]], [[Darrell]] 15 September 2017
 
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Revision as of 22:38, 15 September 2017


Overview

In the Linked Earth context, a working group (WG) is a self-organized coalition of knowledgeable experts, whose activities are governed herewith. This page is dedicated to the discussion of data and metadata standards for lake sediments (see this page for a definition of the lake sediment archive), and aims to formulate a set of recommendations for such a standard. Note that chronological aspects should be discussed within the Chronologies WG.

Specific tasks

Thinking about data standards for lakes is a challenging task because of the incredible diversity of observations made on this archive. To start this process, the working group will focus on developing standards for the one variable in lake sediments that all scientists rely on: depth.

After we've done this process for depth, I suggest we reach out and broaden this group to include broad expertise of different sensor and observations types. A preliminary list is presented below.

Task 1: Depth

How should we report depth?

Definition of essential, recommended, and desired in regards to paleoclimate data standards

For this discussion we recommend:

  • structuring discussions around what scientific questions one would want to ask of the data
  • listing essential, recommended, and desired information for:
    • the measurements themselves
    • any inference made from the measurements (e.g. calibration to temperature)
    • the underlying uncertainties, and what those numbers correspond to (e.g. 1-sigma or 2-sigma?)
  • provide an ideal data table for each type of observation, so the community knows what to report and how to report it.
  • provide separate recommendations for new and legacy datasets

Sample Depth

Note: Do not edit the polls (even for typos) once voting has started as it will reset the vote counts to zero. If a change needs to be made, make an annotation above the old poll (i.e., above the poll tags) and place the new poll below the first one.

In all cases, most simply, we want to report the geometry of a sample from a core. This requires two pieces of information, typically this is either the mid-point depth and thickness, or top and bottom depth. Each has its advantages:

  • Top and bottom depth is more explicit and self explanatory, but typically requires an additional step to use for analysis
  • Mid-point depth is more typically reported, and is what is needed for most age models, but can be ambiguous


In the case of tilted or deformed sedimentary units (for instance due to coring operations), core depths should be read at the center of the core, and information regarding the width of the subsample should be reported.


Results from Twitter Poll (3/14/17 to 3/21/17)
What should be the primary way of reporting depth of samples taken from lake sediments:
You are not entitled to vote.
You are not entitled to view results of this poll.
There were 10 votes since the poll was created on 19:18, 21 September 2016.
poll-id BE3AECAB02A5C21AD92F447B763D2C96

The wiki and twitter polls indicate a slight preference for mid-point and thickness

Dealing with multiple cores

Commonly, multiple cores are used in a study that each have their own depth scale ("Core Depth") and using various methods, those depths are converted to "Composite Depth", which is used for most of the scientific inference. This is important additional information. We want:

  1. Mid-point depth (Core Depth)
  2. Mid-point depth (Composite Depth)
  3. thickness

and ideally, we want to store the necessary information that describes the relationship between core depth and composite depth.

LacCore (and others) use splice and affine tables to accomplish that.

Add a description and discussion of splice and affine tables for discussion here.

Depth Datum

For both core depth and composite depth, we need a datum for depth. Most typically, this is the top of the sediment in each core, for core depth (where depth=0), and is the sediment surface for composite depths. Sometimes, depth from the lake (water) surface is used.

We need to either

  • Describe what datum is being used for each depth measurement

OR

  • choose a universal datum and force datasets to adhere

Or we could do both.

Sensors

Sensors in lakes fall into several different categories

Physical properties of sediment

Several observations can be made on sedimentary sensors including:

  • Density
Table : Essential/Recommended/Desired Metadata for density properties of sediment
Metadata Essential (E)/ Recommended (R) / Desired (D) Reason Added by (optional)
Density E e.g., Wet Bulk Density, Dry Bulk Density, gamma attenuation derived density, X-radiographic derived density, CT-scan derived nick mckay, Darrell 15 September 2017
Water content / Porosity R Often measured along with density, in % mass (for WC) & % volume (for porosity) nick mckay, Darrell 15 September 2017
Native data (for inferred density) D measured data used to infer density nick mckay, Darrell 15 September 2017
Units E for all variables. e.g., mass per volume, preferably g cm-3 nick mckay, Darrell 15 September 2017
Density Type R e.g., inferred or measured density nick mckay, Darrell 15 September 2017
Method R e.g, direct sampling, gamma attenuation, X-ray, CT nick mckay, Darrell 15 September 2017
Interpretation R Is the density sensitive to organic content, glacier extent, temperature, geomorphology? nick mckay, Darrell 15 September 2017
  • particle size
Table : Essential/Recommended/Desired Metadata for particle size properties of sediment
Metadata Essential (E)/ Recommended (R) / Desired (D) Reason Added by (optional)
 % volume or mass (depending on method), by grain size class/interval E Should usually sum to 100% across all classes nick mckay, Darrell 15 September 2017
Units E for all variables. e.g., usually percent by mass or volume nick mckay, Darrell 15 September 2017
Native data (full range of measured grain sizes) R if above is presented at coarser grain size than measured nick mckay, Darrell 15 September 2017
Summary statistics used to characterize distribution R typically median, mode, skewness, kurtosis, sorting statistics, other quantiles nick mckay, Darrell 15 September 2017
Particle size type R e.g., inferred or measured particle size nick mckay, Darrell 15 September 2017
Pretreatment Method R methods for removing organic, carbonate and biogenic silica components of sediment, as well as defloculation nick mckay, Darrell 15 September 2017
Analytical Method R e.g, laser diffraction, sieving, pipette settling, sedigraph, counter, hydrometer, image analysis nick mckay, Darrell 15 September 2017
Analytical Instrument R e.g, Coulter LS 230 nick mckay, Darrell 15 September 2017
Interpretation R Is the percent abundance grain size class interpreted to reflect environmental variability (e.g., lake level, flooding, dust deposition, glacial activity, etc)? nick mckay, Darrell 15 September 2017


  • mineralogy
Table : Essential/Recommended/Desired Metadata for sediment mineralogy
Metadata Essential (E)/ Recommended (R) / Desired (D) Reason Added by (optional)
relative abundance, by mineral E Often relative to the total mass, reference minerals, or ratios between minerals nick mckay, Darrell 15 September 2017
Units E for all variables. e.g., usually percent or unitless nick mckay, Darrell 15 September 2017
Native data R full XRD or other (Raman, electromagnetic) spectrum, counts or images from thin sections nick mckay, Darrell 15 September 2017
mineralogy type R e.g., inferred or measured mineralogy nick mckay, Darrell 15 September 2017
Pretreatment Method R methods for XRD pretreatment (essential for XRD), thin section preparation, removing organic components of sediment, fraction analyzed, etc. nick mckay, Darrell 15 September 2017
Analytical Method R e.g, XRD, microscopy, Raman spectroscopy, other spectral inference nick mckay, Darrell 15 September 2017
Analytical Instrument R Instrument used nick mckay, Darrell 15 September 2017
Interpretation R Is the mineral abundance interpreted to reflect environmental variability (e.g., provenance, weathering, lake level, dust deposition, Redox, water geochemistry, glacial activity, etc)? nick mckay, Darrell 15 September 2017


  • imagery data
Table : Essential/Recommended/Desired Metadata for sediment imagery data
Metadata Essential (E)/ Recommended (R) / Desired (D) Reason Added by (optional)
reflectance or transmittance, by wavelength E detected or normalized intensity of reflected or transmitted electromagnetic radiation nick mckay, Darrell 15 September 2017
Units E for all variables. usually unitless nick mckay, Darrell 15 September 2017
Native data R unnormalized electromagnetic spectrum nick mckay, Darrell 15 September 2017
Post acquisition processing methods R methods describing how the imagery was processed nick mckay, Darrell 15 September 2017
Data reduction methods R peak or trough area methods, etc. nick mckay, Darrell 15 September 2017
Pretreatment Method D methods core or thin section pretreatment nick mckay, Darrell 15 September 2017
Analytical Method R e.g, grayscale, RGB linescan, hyperspectral imagery nick mckay, Darrell 15 September 2017
Analytical Instrument R Instrument used nick mckay, Darrell 15 September 2017
Interpretation R Is the imagery interpreted to reflect environmental variability (e.g., chlorohphyll abundance, provenance, weathering, lake level, dust deposition, Redox, water geochemistry, glacial activity, etc)? nick mckay, Darrell 15 September 2017
  • Accumulation rate (varves & more)
Table : Essential/Recommended/Desired Metadata for sedimentary accumulation rate
Metadata Essential (E)/ Recommended (R) / Desired (D) Reason Added by (optional)
accumulation rate E the rate of sedimentary accumulation, either as vertical change per year, or as mass per area change per year nick mckay, Darrell 15 September 2017
thickness R the vertical thickness of the sedimentary unit nick mckay, Darrell 15 September 2017
density R necessary for mass flux accumulation rates, see standards above nick mckay, Darrell 15 September 2017
Units E length per time for vertical change, mass per area per time for mass flux nick mckay, Darrell 15 September 2017
E is the accumulation rate based on varve counts, other markers of known age, a chronological model, etc nick mckay, Darrell 15 September 2017
accumulation rate type R e.g., inferred or measured nick mckay, Darrell 15 September 2017
Method R e.g, thin section, core surface, software, image analysis, etc. nick mckay, Darrell 15 September 2017
Pretreatment Method D methods for core or thin section pretreatment nick mckay, Darrell 15 September 2017
Interpretation R Is the accumulation sensitive to climate, glacier extent, discharge, geomorphology, anthropogenic activities, etc? nick mckay, Darrell 15 September 2017

Geochemical properties of sediment

  • bulk organic carbon concentrations
  • bulk inorganic carbon concentrations
  • bulk nitrogen concentrations
  • C:N
  • isotope geochemistry
    • bulk organic carbon isotopic composition
    • bulk inorganic carbon isotopic composition
    • bulk nitrogen isotopic composition
    • Compound Specific Isotopic Analysis (CSIA)
Table 4: Essential/Recommended/Desired Metadata for Compound Specific Isotopes
Metadata Essential (E)/ Recommended (R) / Desired (D) Reason Added by (optional)
Category: Location_(L) (Lat, Lon) E Location is a must Jrichey (talk) 07:40, 24 April 2017 (PDT)
Property:Wgs84:Alt (L) (Depth) E Water depth can be useful to get an idea of diagenesis in the core. Especially for deep-sea drilling sediments, water depths can be important to assess various biogeochemical properties Jrichey (talk) 07:40, 24 April 2017 (PDT)
Sample Depth E Positional information needed to relate the samples back to the archive Jrichey (talk) 07:40, 24 April 2017 (PDT)
ChonDataTable E for new datasets/ R for legacy datasets The raw radiocarbon, tie points, 210Pb measurements should be made available so that age models can be updated in light of new calibration curves or new age modeling techniques Jrichey (talk) 07:40, 24 April 2017 (PDT)
Compound(s) analyzed E e.g., n-alkanes, FAMEs, alkenones, dinosterol Jrichey (talk) 07:40, 24 April 2017 (PDT)
Source of compound in sediments R Is this compound marine/aquatic or terrestrial in origin? Jrichey (talk) 07:40, 24 April 2017 (PDT)
Isotope measured E e.g., ∂2H, ∂13C, ∂15N Jrichey (talk) 07:40, 24 April 2017 (PDT)
Environmental Parameter CSIA is sensitive to R Is the CSIA sensitive to salinity, precipitation, E-P, productivity, temperature? Jrichey (talk) 07:40, 24 April 2017 (PDT)

Note: Do not edit the polls (even for typos) once voting has started as it will reset the vote counts to zero. If a change needs to be made, make an annotation above the old poll (i.e., above the poll tags) and place the new poll below the first one.

For compound specific isotopes in lake sediments, should the compound analyzed be:
You are not entitled to vote.
You are not entitled to view results of this poll.
There was one vote since the poll was created on 17:31, 9 May 2017.
poll-id 4A67470058F7ECF24C434F9791E66635

Results of the poll placed on Twitter from May 12th to 19th 2017
For compound specific isotopes in lake sediments, should the source of the compound (terrestrial vs aquatic) be:
You are not entitled to vote.
You are not entitled to view results of this poll.
There was one vote since the poll was created on 17:31, 9 May 2017.
poll-id 160E02C446E0079473B68B9F692FF32E

Results of the poll placed on Twitter from May 12th to 19th 2017
For compound specific isotopes in lake sediments, should the interpretation (e.g., temperature, salinity, precipitation) be:
You are not entitled to vote.
You are not entitled to view results of this poll.
There was one vote since the poll was created on 17:32, 9 May 2017.
poll-id E885F833CA0177DD9EA2200E40145179

Aquatic organisms

Several sensors may be found in lakes including

  • Diatoms
    • may contribute silicic microfossils and biomarkers
  • Ostracods
    • may contribute carbonate microfossils
  • Algae
    • may contribute biomarkers, including alkenones
  • Archaea
    • may contribute biomarkers, including GDGTs
  • Bacteria
    • may contribute biomarkers, including GDGTs
  • Fish
    • may contribute macrofossils, including otoliths

Terrestrial plants

Plants growing around the lake and in the catchment of the lake may contribute macro and microfossils as well as biomarkers to the sediments. Plants are the sensors of the environment and the observations include:

  • Organic geochemical biomarkers:
    • plant wax n-alkanes
    • plant wax n-alkanoic acids
    • plant wax n-alkanols acids
    • plant wax terpenoids
    • lignin
  • Macro/microfossils
    • pollen
    • leaf
    • wood
    • charcoal

Insects

Several sensors in the air above and around lakes may leave microfossils in lake sediments, these include

  • chironimid tests, these are organic microfossils

Magnetic data

From Steve Lund

Essential/Recommended/Desired Metadata for Magnetic Data
Metadata Essential (E)/ Recommended (R) / Desired (D) Reason Added by (optional)
Category: Location_(L) (Lat, Lon) E Location is a must Deborah Khider (talk) 12:05, 14 September 2017 (PDT)
Property:Wgs84:Alt (L) (Depth) E Deborah Khider (talk) 12:05, 14 September 2017 (PDT)
Position within the lake basin E Need to know the distance from land Deborah Khider (talk) 12:05, 14 September 2017 (PDT)
Ancillary data about the archive (carbonate and organic content) R Deborah Khider (talk) 12:05, 14 September 2017 (PDT)
Flag that the signal recorded hasn't been altered by geochemistry D Deborah Khider (talk) 12:05, 14 September 2017 (PDT)


Polls

Here are polls that the group might want to consider:


References

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