Linked Earth Wiki - User contributions [en]

Category talk:Marine Sediment Working Group

2017-10-26T20:44:27Z

Andreasschmittner:

== Foram geochemistry standards -- [[User:Lukas|Lukas]] ([[User talk:Lukas|talk]]) 02:52, 23 November 2016 (PST) ==

OK, I hope I'm doing this right. Somehow I find the wiki thing not very intuitive and I'm too lazy to find out how it really works...

Here's what I use for my own project; I don't distinguish between stable isotopes, Mg/Ca and trace elements when it comes to metadata. Since I'm working with legacy datasets there are only a few things that I consider essential (indicated with (E)), but I think we should push to make the remaining metadata fields at least recommended: 

Parameter (E) 
Parameter.type (E): measured or inferred 
Parameter.unit (E) 
Parameter.analytical.error: based on repeat measurement of standard, 1SD 
Parameter.reproducibility: based on repeat measurement of sample, 1SD 
Instrument 
Laboratory 
Species (E): in case of foraminifera 
Nshells.measured: number of shells used 
Size.fraction: size fraction of foraminifera shells 
Notes 
Habitat.Season: from paper 
Habitat.Depth: from paper. add epifaunal, infaunal for benthics 
Equilibrium.offset: from paper 
Calibration.eq: for inferred parameters 
Calibration.uncertainty 
Calibration.DOI 
Publication.DOI: publication(s) where data were reported 
Data.source (E): to allow tracing of legacy data, either DOI, link or ... 

For trace elements cleaning method would be a good one to include.

== -- [[User:Andreasschmittner|Andreasschmittner]] ([[User talk:Andreasschmittner|talk]]) 13:43, 26 October 2017 (PDT) ==

I wonder if we need a standard for core names.

With regard to depths reporting I would argue that having depth_top and depth_bottom precisely defines the interval and if only the mean depth is known one can indicate that by having the same value in both depth_top and depth_bottom.

Category talk:Marine Sediment Working Group

2017-10-26T20:43:31Z

Andreasschmittner: /* -- ~~~~ */ new section

I wonder if we need a standard for core names. (Andreas)

With regard to depths reporting I would argue that having depth_top and depth_bottom precisely defines the interval and if only the mean depth is known one can indicate that by having the same value in both depth_top and depth_bottom.

== Foram geochemistry standards -- [[User:Lukas|Lukas]] ([[User talk:Lukas|talk]]) 02:52, 23 November 2016 (PST) ==

OK, I hope I'm doing this right. Somehow I find the wiki thing not very intuitive and I'm too lazy to find out how it really works...

Here's what I use for my own project; I don't distinguish between stable isotopes, Mg/Ca and trace elements when it comes to metadata. Since I'm working with legacy datasets there are only a few things that I consider essential (indicated with (E)), but I think we should push to make the remaining metadata fields at least recommended: 

Parameter (E) 
Parameter.type (E): measured or inferred 
Parameter.unit (E) 
Parameter.analytical.error: based on repeat measurement of standard, 1SD 
Parameter.reproducibility: based on repeat measurement of sample, 1SD 
Instrument 
Laboratory 
Species (E): in case of foraminifera 
Nshells.measured: number of shells used 
Size.fraction: size fraction of foraminifera shells 
Notes 
Habitat.Season: from paper 
Habitat.Depth: from paper. add epifaunal, infaunal for benthics 
Equilibrium.offset: from paper 
Calibration.eq: for inferred parameters 
Calibration.uncertainty 
Calibration.DOI 
Publication.DOI: publication(s) where data were reported 
Data.source (E): to allow tracing of legacy data, either DOI, link or ... 

For trace elements cleaning method would be a good one to include.

== -- [[User:Andreasschmittner|Andreasschmittner]] ([[User talk:Andreasschmittner|talk]]) 13:43, 26 October 2017 (PDT) ==

gaga

Category talk:Marine Sediment Working Group

2017-10-26T20:42:18Z

Andreasschmittner: Argument concerning depth reporting

Category talk:Marine Sediment Working Group

2017-10-26T20:36:08Z

Andreasschmittner:

I wonder if we need a standard for core names. (Andreas)

== Foram geochemistry standards -- [[User:Lukas|Lukas]] ([[User talk:Lukas|talk]]) 02:52, 23 November 2016 (PST) ==

OK, I hope I'm doing this right. Somehow I find the wiki thing not very intuitive and I'm too lazy to find out how it really works...

Here's what I use for my own project; I don't distinguish between stable isotopes, Mg/Ca and trace elements when it comes to metadata. Since I'm working with legacy datasets there are only a few things that I consider essential (indicated with (E)), but I think we should push to make the remaining metadata fields at least recommended: 

Parameter (E) 
Parameter.type (E): measured or inferred 
Parameter.unit (E) 
Parameter.analytical.error: based on repeat measurement of standard, 1SD 
Parameter.reproducibility: based on repeat measurement of sample, 1SD 
Instrument 
Laboratory 
Species (E): in case of foraminifera 
Nshells.measured: number of shells used 
Size.fraction: size fraction of foraminifera shells 
Notes 
Habitat.Season: from paper 
Habitat.Depth: from paper. add epifaunal, infaunal for benthics 
Equilibrium.offset: from paper 
Calibration.eq: for inferred parameters 
Calibration.uncertainty 
Calibration.DOI 
Publication.DOI: publication(s) where data were reported 
Data.source (E): to allow tracing of legacy data, either DOI, link or ... 

For trace elements cleaning method would be a good one to include.

Category talk:Marine Sediment Working Group

2017-10-26T20:22:19Z

Andreasschmittner: added question

I wonder if we need a standard for core names.

== Foram geochemistry standards -- [[User:Lukas|Lukas]] ([[User talk:Lukas|talk]]) 02:52, 23 November 2016 (PST) ==

OK, I hope I'm doing this right. Somehow I find the wiki thing not very intuitive and I'm too lazy to find out how it really works...

Here's what I use for my own project; I don't distinguish between stable isotopes, Mg/Ca and trace elements when it comes to metadata. Since I'm working with legacy datasets there are only a few things that I consider essential (indicated with (E)), but I think we should push to make the remaining metadata fields at least recommended: 

Parameter (E) 
Parameter.type (E): measured or inferred 
Parameter.unit (E) 
Parameter.analytical.error: based on repeat measurement of standard, 1SD 
Parameter.reproducibility: based on repeat measurement of sample, 1SD 
Instrument 
Laboratory 
Species (E): in case of foraminifera 
Nshells.measured: number of shells used 
Size.fraction: size fraction of foraminifera shells 
Notes 
Habitat.Season: from paper 
Habitat.Depth: from paper. add epifaunal, infaunal for benthics 
Equilibrium.offset: from paper 
Calibration.eq: for inferred parameters 
Calibration.uncertainty 
Calibration.DOI 
Publication.DOI: publication(s) where data were reported 
Data.source (E): to allow tracing of legacy data, either DOI, link or ... 

For trace elements cleaning method would be a good one to include.

Andreas Schmittner

2017-10-26T20:19:44Z

Andreasschmittner: Added PropertyValue: Website = http://people.oregonstate.edu/~schmita2/

[[Category:Person_(L)]]
{{#set:
Expertise=Climate_Modeling|
Expertise=Paleoceanography|
Github ID=https://github.com/OSU-CEOAS-Schmittner|
Google Scholar ID=https://scholar.google.com/citations?user=uN83_msAAAAJ&hl=en|
Has User ID=Andreasschmittner|
Highest Degree=PhD|
Name (L)=Andreas Schmittner|
OrcidNumber (L)=0000-0002-8376-0843|
Picture URL=Http://wiki.linked.earth/wiki/images/thumb/3/32/Portrait.jpg/428px-Portrait.jpg|
Subscribes To=Category:Marine_Sediment_Working_Group|
Twitter ID=@ASchmittner|
University=University of Bern|
Website=http://people.oregonstate.edu/~schmita2/}}

Andreas Schmittner

2017-10-26T20:19:30Z

Andreasschmittner: Added PropertyValue: Google Scholar ID = https://scholar.google.com/citations?user=uN83_msAAAAJ&hl=en

Andreas Schmittner

2017-10-26T20:18:28Z

Andreasschmittner: Added PropertyValue: Github ID = https://github.com/OSU-CEOAS-Schmittner

[[Category:Person_(L)]]
{{#set:
Expertise=Climate_Modeling|
Expertise=Paleoceanography|
Github ID=https://github.com/OSU-CEOAS-Schmittner|
Has User ID=Andreasschmittner|
Highest Degree=PhD|
Name (L)=Andreas Schmittner|
OrcidNumber (L)=0000-0002-8376-0843|
Picture URL=Http://wiki.linked.earth/wiki/images/thumb/3/32/Portrait.jpg/428px-Portrait.jpg|
Subscribes To=Category:Marine_Sediment_Working_Group|
Twitter ID=@ASchmittner|
University=University of Bern}}

Andreas Schmittner

2017-10-26T20:17:43Z

Andreasschmittner: Added PropertyValue: Twitter ID = @ASchmittner

[[Category:Person_(L)]]
{{#set:
Expertise=Climate_Modeling|
Expertise=Paleoceanography|
Has User ID=Andreasschmittner|
Highest Degree=PhD|
Name (L)=Andreas Schmittner|
OrcidNumber (L)=0000-0002-8376-0843|
Picture URL=Http://wiki.linked.earth/wiki/images/thumb/3/32/Portrait.jpg/428px-Portrait.jpg|
Subscribes To=Category:Marine_Sediment_Working_Group|
Twitter ID=@ASchmittner|
University=University of Bern}}

Andreas Schmittner

2017-10-26T20:16:44Z

Andreasschmittner: Set PropertyValue: University = University of Bern

Andreas Schmittner

2017-10-26T20:16:32Z

Andreasschmittner: Added PropertyValue: University = Bern

Andreas Schmittner

2017-10-26T20:16:16Z

Andreasschmittner: Added PropertyValue: Highest Degree = PhD

Andreas Schmittner

2017-10-26T20:14:13Z

Andreasschmittner: Added PropertyValue: Expertise = Paleoceanography

[[Category:Person_(L)]]
{{#set:
Expertise=Paleoceanography|
Expertise=Climate_Modeling|
Has User ID=Andreasschmittner|
Name (L)=Andreas Schmittner|
OrcidNumber (L)=0000-0002-8376-0843|
Picture URL=Http://wiki.linked.earth/wiki/images/thumb/3/32/Portrait.jpg/428px-Portrait.jpg|
Subscribes To=Category:Marine_Sediment_Working_Group}}

Andreas Schmittner

2017-10-26T20:13:54Z

Andreasschmittner: Added PropertyValue: Expertise = Climate Modeling

[[Category:Person_(L)]]
{{#set:
Expertise=Climate_Modeling|
Has User ID=Andreasschmittner|
Name (L)=Andreas Schmittner|
OrcidNumber (L)=0000-0002-8376-0843|
Picture URL=Http://wiki.linked.earth/wiki/images/thumb/3/32/Portrait.jpg/428px-Portrait.jpg|
Subscribes To=Category:Marine_Sediment_Working_Group}}

Andreas Schmittner

2017-10-26T20:13:36Z

Andreasschmittner: Added PropertyValue: OrcidNumber (L) = 0000-0002-8376-0843

[[Category:Person_(L)]]
{{#set:
Has User ID=Andreasschmittner|
Name (L)=Andreas Schmittner|
OrcidNumber (L)=0000-0002-8376-0843|
Picture URL=Http://wiki.linked.earth/wiki/images/thumb/3/32/Portrait.jpg/428px-Portrait.jpg|
Subscribes To=Category:Marine_Sediment_Working_Group}}

Andreas Schmittner

2017-10-26T20:11:16Z

Andreasschmittner: Added PropertyValue: Subscribes To = Category:Marine_Sediment_Working_Group

[[Category:Person_(L)]]
{{#set:
Has User ID=Andreasschmittner|
Name (L)=Andreas Schmittner|
Picture URL=Http://wiki.linked.earth/wiki/images/thumb/3/32/Portrait.jpg/428px-Portrait.jpg|
Subscribes To=Category:Marine_Sediment_Working_Group}}

Andreas Schmittner

2017-10-26T20:11:10Z

Andreasschmittner: Set PropertyValue: Picture URL = http://wiki.linked.earth/wiki/images/thumb/3/32/Portrait.jpg/428px-Portrait.jpg

[[Category:Person_(L)]]
{{#set:
Has User ID=Andreasschmittner|
Name (L)=Andreas Schmittner|
Picture URL=Http://wiki.linked.earth/wiki/images/thumb/3/32/Portrait.jpg/428px-Portrait.jpg}}

Andreas Schmittner

2017-10-26T20:10:42Z

Andreasschmittner: Set PropertyValue: Picture URL = http://wiki.linked.earth/File:Portrait.jpg

[[Category:Person_(L)]]
{{#set:
Has User ID=Andreasschmittner|
Name (L)=Andreas Schmittner|
Picture URL=Http://wiki.linked.earth/File:Portrait.jpg}}

File:Portrait.jpg

2017-10-26T20:10:13Z

Andreasschmittner:

Andreas Schmittner

2017-10-26T20:06:08Z

Andreasschmittner: Setting categories as Person_(L)

[[Category:Person_(L)]]
{{#set:
Name (L)=Andreas Schmittner}}

Andreas Schmittner

2017-10-26T20:06:08Z

Andreasschmittner: Added PropertyValue: Has_User_ID = Andreasschmittner

[[Category:Person_(L)]]
{{#set:
Has User ID=Andreasschmittner|
Name (L)=Andreas Schmittner}}

Property:Abstract

2016-11-04T20:33:13Z

Andreasschmittner:

* Property Type: [[has type::Text]]
A summary of a scientific article.

OC3

2016-09-17T00:19:27Z

Andreasschmittner: Setting categories as Chronologies Working Group, Marine Sediment Working Group, Working Group

[[Category:Chronologies Working Group]]
[[Category:Marine Sediment Working Group]]
[[Category:Working Group]]
[[File:WGLogoOC3.png|thumb|right|alt=OC3 Logo]]

OC3

2016-09-17T00:19:14Z

Andreasschmittner: Setting categories as Chronologies Working Group, Working Group

[[Category:Chronologies Working Group]]
[[Category:Working Group]]
[[File:WGLogoOC3.png|thumb|right|alt=OC3 Logo]]

OC3

2016-09-17T00:18:48Z

Andreasschmittner:

[[Category:Working Group]]
[[File:WGLogoOC3.png|thumb|right|alt=OC3 Logo]]

OC3

2016-09-17T00:18:31Z

Andreasschmittner: Setting categories as Working Group

[[Category:Working Group]]

File:WGLogoOC3.png

2016-09-17T00:09:50Z

Andreasschmittner:

Quick Guide to Editing Wiki Pages

2016-09-16T23:20:24Z

Andreasschmittner: /* Quick Markup Guide */

Once you are [[Get Started with the LinkedEarth wiki | registered]], you can start editing existing pages, creating new ones, and move/delete obsolete pages. The pages you are allowed to edit depends on your editorial level.

This guide provides basic instructions on how to use the MediaWiki format. If you require more help, use this [https://www.mediawiki.org/wiki/Help:Contents Help] or [mailto:linkedearth@gmail.com contact us].

The quickest way to figure out how to do something is to find and example of what you want to do from another page, or on Wikipedia, and copy the source code from there.

=Editing existing wiki pages=

==Quick Markup Guide==

{| class="wikitable"
! style="width: 50%" | What it looks like
! style="width: 50%" | What you type
|-
|
''Italic Text''
|<pre>
''Italic Text'' </pre>
|-
|
'''Bold Text'''
|<pre>
'''Bold Text'''
</pre>
|-
|
'''''Bold and italic'''''
|<pre>
'''''Bold Text'''''
</pre>
|-
|
<strike> strike text </strike>
| <pre>
<strike> strike text </strike>
</pre>
|}

== Section Headings and Lists==

{| class="wikitable"
! style="width: 33%" | Description
! style="width: 33%" | What it looks like
! style="width: 34%" | What you type
|-
|
Headings

* Skip Level 1, it is page name level.
* An article with 4 or more headings automatically creates a Table of Contents.

|
==Level 2==
=== Level 3===
====Level 4 ====
===== Level 5 =====
====== Level 6 ======
|<pre>
==Level 2==
=== Level 3===
====Level 4 ====
===== Level 5 =====
====== Level 6 ======
</pre>
|-
|
Bullet List
|
* Level 1
** Level 2
*** Level 3
|<pre>
* Level 1
** Level 2
*** Level 3
</pre>
|-
|Numbered List
|
# Level 1
## Level 2
### Level 3
|<pre>
# Level 1
## Level 2
### Level 3
</pre>
|-
| Comment
|

Comments are visible only in the edit zone
|<pre>

Comments are visible only in the edit zone
</pre>
|}

== Links ==

=== Internal Links ===

{| class="wikitable"
! style="width: 33%" | Description
! style="width: 33%" | What it looks like
! style="width: 34%" | What you type
|-
|
Internal Link
|
[[Main Page]]
|<pre>
[[Main Page]] </pre>
|-
| Piped Link
Use different text for the link
|
[[Main Page|Go to the Main Page]]
|<pre>
[[Main Page|Go to the Main Page]]
</pre>
|-
|Word-ending links, following so called "link trail rules"
|
[[Radioisotopes in Corals]]
| <pre>
[[Radioisotopes in Corals]] </pre>
|-
| Internal Link to the current page's talk page
|
[[{{TALKPAGENAME}}|Discussion]]
| <pre>
[[{{TALKPAGENAME}}|Discussion]] </pre>
|-
| Internal link to an image or a file of other types
| [[media:PSM.jpg]]
| <pre>
[[media:PSM.jpg]]</pre>
|-
| Internal link to the user's user page
| [[Special:MyPage]]
|<pre>
[[Special:MyPage]]</pre>
|-
| Internal link to a category page
| [[:Category:Working_Group]]
|<pre>
[[:Category:Working_Group]]</pre>
|}

=== External Link===

{| class="wikitable"
! style="width: 33%" | Description
! style="width: 33%" | What it looks like
! style="width: 34%" | What you type
|-
|External link
| https://www.wikipedia.org
| <pre> https://www.wikipedia.org </pre>
|-
|External link with different label
| [https://www.wikipedia.org Wikipedia]
| <pre> [https://www.wikipedia.org Wikipedia]</pre>
|-
| Numbered external link
| [https://www.wikipedia.org]
| <pre> [https://www.wikipedia.org] </pre>
|-
|Mailto link
| [mailto:linkedearth@gmail.com email us]
| <pre> [mailto:linkedearth@gmail.com email us] </pre>
|}

==Images==

To insert an image into an article ('''For a LiPD file, use this [[Special:WTLiPD | page]]'''), click on the "Upload file" button in the lefthand menu (Figure 1).

[[File:TutorialFig23.png|thumb|none|700px|Figure 1: uploading an image or document to the Linked Earth wiki.]]

First select the document you want to upload, then just hit the "Upload file" button at the bottom of the page.

'''Be Specific in the name file''': If you wish to upload a picture of your archive, do NOT name the file 'MyArchive.jpg'. Read the [[Best Practices]] guide to learn how to properly name your file.

This file can then be referenced using an internal link described [[#Internal Links | above]].

== Tables and Equations ==

Tables and equations are more complicated. For a more thorough explanation, see Wikipedia's pages on [https://en.wikipedia.org/wiki/Help:Displaying_a_formula formulas] and [https://en.wikipedia.org/wiki/Help:Table tables].

===Tables===

The following code

<pre>
{| class="wikitable"
|-
|+Table 1.
|-
! Header text 1 || Header text 2 || Header text 3
|-
| Example 1 || Example 2 || Example 3
|-
| Example A || Example B || Example C
|-
| Example ! || Example @ || Example #
|}
</pre>

results in:

{| class="wikitable"
|-
|+Table 1.
|-
! Header text 1 || Header text 2 || Header text 3
|-
| Example 1 || Example 2 || Example 3
|-
| Example A || Example B || Example C
|-
| Example ! || Example @ || Example #
|}

===Equations===

Equations use the LaTex markup language and are bounded by <nowiki><math></nowiki> and <nowiki></math></nowiki> tags. For instance, <nowiki><math> \delta^{18}O_{SMOW} = 1.03091 (\delta^{18}O_{PDB}) +30.91 </math></nowiki> results in:

<math> \delta^{18}O_{SMOW} = 1.03091 (\delta^{18}O_{PDB}) +30.91 </math>

==References==

All references consist of a citation and an actual reference. The citation is a tag that contains a shorthand form of the reference, and is followed, on first use in an article, by the completed reference.

The LinkedEarth wiki uses APA style for citation

To create a reference:
* First citation in the article:
<pre>Khider et al. <ref name = Khider_2014> Khider, D., Jackson, C. S., & Stott, L. D. (2014). Assessing millennial-scale variability during the Holocene: A perspective from the western tropical Pacific. Paleoceanography, 29(3), 143-159. doi:10.1002/2013pa002534 </ref></pre>

becomes Khider et al. <ref name = Khider_2014> Khider, D., Jackson, C. S., & Stott, L. D. (2014). Assessing millennial-scale variability during the Holocene: A perspective from the western tropical Pacific. Paleoceanography, 29(3), 143-159. doi:10.1002/2013pa002534 </ref>

*Subsequent citations
<pre> Khider et al.<ref name = Khider_2014 /></pre>

will automatically create a footnote marker that will link to the original reference: Khider et al. <ref name = Khider_2014 />

=Creating a new wiki page=

To create a new page, type the link into your browser: [http://wiki.linked.earth/New_Page http://wiki.linked.earth/New_Page] and replace "New Page" above by the name that you want for the page.

Then, either select a category for this page (Figure 2):

[[File:TutorialFig16.png|thumb|none|300px|Figure 2: Selecting a category for a new page]]

or, just click on the "Create" link to create a page without any category (Figure 3)

[[File:TutorialFig17.png|thumb|none|200px|Figure 3: create page button, located on the bottom right of the page]]

Alternatively, you can search for the page you are looking for (remember that the wiki is case sensitive). If the page does not exist, you will be prompted to create it. You should '''always''' try to look for the term you want to define before creating a new page to avoid duplicate pages of similar concepts.

=Deleting an existing wiki page=

Go to the page you want to delete and select "Delete" from the drop down menu as shown in Figure 4.

[[File:TutorialFig18.png|thumb|none|300px|Figure 4: Wiki page option menu]]

Click on the "Delete" link, and delete the page. You will be prompted to give a reason for the deletion.

[[File:TutorialFig19.png|thumb|none|500px|Figure 5: Deleting menu]]

= Renaming wiki pages =

Wiki pages may need to be renamed because of typos in the page name or community agreement to rename a term in the LinkedEarth ontology. In order to rename an existing page without losing any of its contents, you should click on the "Move" button under the "More" menu on the top of the page (Figure 6)

[[File:TutorialFig21.png|thumb|none|500px|Figure 6: Moving an existing wiki page]]

You will be prompted to enter the new name for the page and a reason for the change.

[[File:TutorialFig22.png|thumb|none|700px|Figure 7: Moving a wiki page form.]]

=References=

Paleoclimate

2016-09-16T22:58:55Z

Andreasschmittner: Creating new page

[[Category:Expertise]]